/EXTERNAL BLUEPRINT/methylation/K006336_5_lane_gembs

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SAMPLE K006336_5_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26823411 23470291 87.50 %
NonRefCpG 312938 184331 58.90 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006336_5_lane_gembs_coverage_refCpG.png ./IMG//K006336_5_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006336_5_lane_gembs_coverage_nonRefCpG.png ./IMG//K006336_5_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006336_5_lane_gembs_quality_refcpg.png ./IMG//K006336_5_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006336_5_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 5719838 11.39 % 4869951 10.59 % 85511 15.34 % 28759 7.25 %
Intermediate (0.3-0.7) 5567348 11.08 % 4371855 9.51 % 98835 17.73 % 50995 12.85 %
Methylated (0.7-1) 38938373 77.53 % 36743911 79.90 % 372999 66.92 % 316999 79.90 %
Median Methylation 0.890 0.900 0.850 0.900