/EXTERNAL McGill EMC/K006127_1_lane_gembs

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SAMPLE K006127_1_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 809924614 100.00 % 404962307 100.00 % 404962307 100.00 %
General Reads 787669948 97.25 % 397331627 98.12 % 390338321 96.39 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 258304 0.03 % 130562 0.03 % 127742 0.03 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 21996362 2.72 % 7500118 1.85 % 14496244 3.58 %
Bisulfite_reads C2T 402000161 49.63 % 202756290 50.07 % 199243871 49.20 %
Bisulfite_reads G2A 385928091 47.65 % 194705899 48.08 % 191222192 47.22 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 331561952
Average Unique 81.87 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 32117996293 39.26 % 12599683298 30.81 % 19518312995 47.72 %
Base Counts Overall C 8642019817 10.56 % 461134597 1.13 % 8180885220 20.00 %
Base Counts Overall G 8631323099 10.55 % 8154588783 19.94 % 476734316 1.17 %
Base Counts Overall T 31565977318 38.59 % 19256012466 47.08 % 12309964852 30.10 %
Base Counts Overall N 845069487 1.03 % 429773863 1.05 % 415295624 1.02 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9923842689665034
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 378758981



Mapping Quality

Mapping Quality Histogram
K006127_1_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K006127_1_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
McGill0327.Bisulfite-Seq.DNA_Methylation.EGAX00001273373.fastq_MS032701