/EXTERNAL McGill EMC/methylation/K006127_1_lane_gembs

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SAMPLE K006127_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26431118 19509980 73.81 %
NonRefCpG 184362 103229 55.99 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006127_1_lane_gembs_coverage_refCpG.png ./IMG//K006127_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006127_1_lane_gembs_coverage_nonRefCpG.png ./IMG//K006127_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006127_1_lane_gembs_quality_refcpg.png ./IMG//K006127_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006127_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 6093358 11.77 % 3255344 7.73 % 36546 10.68 % 10182 4.40 %
Intermediate (0.3-0.7) 10909726 21.07 % 7888063 18.73 % 85388 24.94 % 45889 19.81 %
Methylated (0.7-1) 34786640 67.17 % 30970581 73.54 % 220412 64.38 % 175601 75.80 %
Median Methylation 0.810 0.840 0.800 0.840