/EXTERNAL McGill EMC/K006129_1_lane_gembs/McGill0001.Bisulfite-Seq.DNA_Methylation.EGAX00001425068.release_6

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SAMPLE K006129_1_lane_gembs LANE McGill0001.Bisulfite-Seq.DNA_Methylation.EGAX00001425068.release_6

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 300135134 100.00 % 150067567 100.00 % 150067567 100.00 %
General Reads 289923943 96.60 % 145722568 97.10 % 144201375 96.09 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 166204 0.06 % 83880 0.06 % 82324 0.05 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 10044987 3.35 % 4261119 2.84 % 5783868 3.85 %
Bisulfite_reads C2T 147934368 49.29 % 74353732 49.55 % 73580636 49.03 %
Bisulfite_reads G2A 142155779 47.36 % 71452716 47.61 % 70703063 47.11 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 120666437
Average Unique 80.41 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 11918363194 39.32 % 5004679499 33.02 % 6913683695 45.61 %
Base Counts Overall C 3159775755 10.42 % 245500605 1.62 % 2914275150 19.23 %
Base Counts Overall G 3191077912 10.53 % 2932351824 19.35 % 258726088 1.71 %
Base Counts Overall T 11734311103 38.71 % 6819016225 44.99 % 4915294878 32.43 %
Base Counts Overall N 310120570 1.02 % 155276114 1.02 % 154844456 1.02 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9586065844623778
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 137601607



Mapping Quality

Mapping Quality Histogram
McGill0001.Bisulfite-Seq.DNA_Methylation.EGAX00001425068.release_6.mapq.png



Read Length

Read Length Reads
100 150067567
100 150067567



Insert Size Plot

Insert Size Histogram
McGill0001.Bisulfite-Seq.DNA_Methylation.EGAX00001425068.release_6.isize.png