/EXTERNAL McGill EMC/mapping_coverage/K006129_1_lane_gembs
BACK
SAMPLE K006129_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
256195812 |
100% |
23727557591 |
100% |
| Mapped |
252369117 |
98.51 % |
23344888091 |
98.39 % |
| Passed |
175388825 |
68.46 % |
15646858891 |
65.94 % |
| NotPassed |
76980292 |
30.05 % |
7698029200 |
32.44 % |
| |
|
|
|
|
| LowMAPQ |
40405862 |
15.77 % |
4040586200 |
17.03 % |
| MateUnmapped |
3826695 |
1.49 % |
382669500 |
1.61 % |
| Duplicate |
33882746 |
13.23 % |
3388274600 |
14.28 % |
| BadOrientation |
18 |
0.00 % |
1800 |
0.00 % |
| LargeInsertSize |
2038 |
0.00 % |
203800 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
2689628 |
1.05 % |
268962800 |
1.13 % |
| Unmapped |
3826695 |
1.49 % |
382669500 |
1.61 % |
Base Level Counts
| Bases |
# |
% |
| Total |
17440746800 |
100% |
| Passed |
14357006030 |
82.32 % |
| Trimmed |
792785329 |
4.55 % |
| Clipped |
30360834 |
0.17 % |
| Overlapping |
1763527075 |
10.11 % |
| LowQuality |
497067532 |
2.85 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |