/EXTERNAL McGill EMC/methylation/K006129_1_lane_gembs

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SAMPLE K006129_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 23130542 1538142 6.65 %
NonRefCpG 381537 12672 3.32 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006129_1_lane_gembs_coverage_refCpG.png ./IMG//K006129_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006129_1_lane_gembs_coverage_nonRefCpG.png ./IMG//K006129_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006129_1_lane_gembs_quality_refcpg.png ./IMG//K006129_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006129_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 3955904 10.62 % 91801 2.33 % 155054 24.83 % 2529 5.81 %
Intermediate (0.3-0.7) 12100673 32.48 % 741766 18.81 % 208592 33.41 % 8900 20.43 %
Methylated (0.7-1) 21202004 56.91 % 3110335 78.86 % 260744 41.76 % 32125 73.76 %
Median Methylation 0.750 0.860 0.610 0.850