/EXTERNAL McGill EMC/K006130_1_lane_gembs/McGill0012.Bisulfite-Seq.DNA_Methylation.EGAX00001272887.fastq_MS001201

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SAMPLE K006130_1_lane_gembs LANE McGill0012.Bisulfite-Seq.DNA_Methylation.EGAX00001272887.fastq_MS001201

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 740478426 100.00 % 370239213 100.00 % 370239213 100.00 %
General Reads 713150331 96.31 % 357154913 96.47 % 355995418 96.15 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 1729725 0.23 % 867048 0.23 % 862677 0.23 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 25598370 3.46 % 12217252 3.30 % 13381118 3.61 %
Bisulfite_reads C2T 364350804 49.20 % 182448496 49.28 % 181902308 49.13 %
Bisulfite_reads G2A 350529252 47.34 % 175573465 47.42 % 174955787 47.25 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 287515774
Average Unique 77.66 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 28980175091 38.75 % 11564850365 30.93 % 17415324726 46.57 %
Base Counts Overall C 8281683117 11.07 % 541180283 1.45 % 7740502834 20.70 %
Base Counts Overall G 8242132914 11.02 % 7645539177 20.45 % 596593737 1.60 %
Base Counts Overall T 28517469821 38.13 % 17265507249 46.17 % 11251962572 30.09 %
Base Counts Overall N 766860083 1.03 % 377083439 1.01 % 389776644 1.04 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9946570433981616
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 331745638



Mapping Quality

Mapping Quality Histogram
McGill0012.Bisulfite-Seq.DNA_Methylation.EGAX00001272887.fastq_MS001201.mapq.png



Read Length

Read Length Reads
100 370239213
100 370239213



Insert Size Plot

Insert Size Histogram
McGill0012.Bisulfite-Seq.DNA_Methylation.EGAX00001272887.fastq_MS001201.isize.png