/EXTERNAL McGill EMC/mapping_coverage/K006130_1_lane_gembs
BACK
SAMPLE K006130_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
693370174 |
100% |
62313820582 |
100% |
| Mapped |
687062094 |
99.09 % |
61683012582 |
98.99 % |
| Passed |
538483298 |
77.66 % |
46825132982 |
75.14 % |
| NotPassed |
148578796 |
21.43 % |
14857879600 |
23.84 % |
| |
|
|
|
|
| LowMAPQ |
103177924 |
14.88 % |
10317792400 |
16.56 % |
| MateUnmapped |
6308080 |
0.91 % |
630808000 |
1.01 % |
| Duplicate |
19884919 |
2.87 % |
1988491900 |
3.19 % |
| BadOrientation |
38 |
0.00 % |
3800 |
0.00 % |
| LargeInsertSize |
124850 |
0.02 % |
12485000 |
0.02 % |
| |
|
|
|
|
| NotCorrectlyAligned |
25391065 |
3.66 % |
2539106500 |
4.07 % |
| Unmapped |
6308080 |
0.91 % |
630808000 |
1.01 % |
Base Level Counts
| Bases |
# |
% |
| Total |
53830109500 |
100% |
| Passed |
43721794744 |
81.22 % |
| Trimmed |
2401943048 |
4.46 % |
| Clipped |
89198040 |
0.17 % |
| Overlapping |
6915778478 |
12.85 % |
| LowQuality |
701395190 |
1.30 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |