/EXTERNAL McGill EMC/methylation/K006130_1_lane_gembs

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SAMPLE K006130_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26490055 15665428 59.14 %
NonRefCpG 264962 127707 48.20 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006130_1_lane_gembs_coverage_refCpG.png ./IMG//K006130_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006130_1_lane_gembs_coverage_nonRefCpG.png ./IMG//K006130_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006130_1_lane_gembs_quality_refcpg.png ./IMG//K006130_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006130_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 7146692 13.85 % 2956779 8.10 % 64795 12.98 % 19796 6.33 %
Intermediate (0.3-0.7) 14380926 27.87 % 8788645 24.07 % 146766 29.40 % 76289 24.38 %
Methylated (0.7-1) 30064059 58.27 % 24764660 67.83 % 287576 57.61 % 216781 69.29 %
Median Methylation 0.760 0.810 0.750 0.820