{
    "name": "Untitled", 
    "desc": "No description", 
    "flagstat_qc": [
        {
            "total": 91725664, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 88985699, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 97.01, 
            "paired": 91725664, 
            "paired_qc_failed": 0, 
            "read1": 45862832, 
            "read1_qc_failed": 0, 
            "read2": 45862832, 
            "read2_qc_failed": 0, 
            "paired_properly": 88215827, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 96.17, 
            "with_itself": 88547133, 
            "with_itself_qc_failed": 0, 
            "singletons": 438566, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.48, 
            "diff_chroms": 114576, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "ctl_flagstat_qc": [
        {
            "total": 112182380, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 109790255, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 97.87, 
            "paired": 112182380, 
            "paired_qc_failed": 0, 
            "read1": 56091190, 
            "read1_qc_failed": 0, 
            "read2": 56091190, 
            "read2_qc_failed": 0, 
            "paired_properly": 108525037, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 96.74, 
            "with_itself": 109236441, 
            "with_itself_qc_failed": 0, 
            "singletons": 553814, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.49, 
            "diff_chroms": 375641, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "dup_qc": [
        {
            "unpaired_reads": 0, 
            "paired_reads": 39289568, 
            "unmapped_reads": 0, 
            "unpaired_dupes": 0, 
            "paired_dupes": 21604644, 
            "paired_opt_dupes": 7695, 
            "dupes_pct": 0.549882
        }
    ], 
    "ctl_dup_qc": [
        {
            "unpaired_reads": 0, 
            "paired_reads": 47985507, 
            "unmapped_reads": 0, 
            "unpaired_dupes": 0, 
            "paired_dupes": 3406633, 
            "paired_opt_dupes": 6387, 
            "dupes_pct": 0.070993
        }
    ], 
    "pbc_qc": [
        {
            "total_read_pairs": 39288749, 
            "distinct_read_pairs": 17684530, 
            "one_read_pair": 8317144, 
            "two_read_pair": 4205230, 
            "NRF": 0.450117, 
            "PBC1": 0.470306, 
            "PBC2": 1.97781
        }
    ], 
    "ctl_pbc_qc": [
        {
            "total_read_pairs": 47950820, 
            "distinct_read_pairs": 44546891, 
            "one_read_pair": 41387028, 
            "two_read_pair": 2937039, 
            "NRF": 0.929012, 
            "PBC1": 0.929067, 
            "PBC2": 14.091412
        }
    ], 
    "nodup_flagstat_qc": [
        {
            "total": 35369848, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 35369848, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 100.0, 
            "paired": 35369848, 
            "paired_qc_failed": 0, 
            "read1": 17684924, 
            "read1_qc_failed": 0, 
            "read2": 17684924, 
            "read2_qc_failed": 0, 
            "paired_properly": 35369848, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 100.0, 
            "with_itself": 35369848, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "ctl_nodup_flagstat_qc": [
        {
            "total": 89157748, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 89157748, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 100.0, 
            "paired": 89157748, 
            "paired_qc_failed": 0, 
            "read1": 44578874, 
            "read1_qc_failed": 0, 
            "read2": 44578874, 
            "read2_qc_failed": 0, 
            "paired_properly": 89157748, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 100.0, 
            "with_itself": 89157748, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "overlap_reproducibility_qc": {
        "Nt": 0, 
        "N1": 65813, 
        "Np": 0, 
        "N_opt": 65813, 
        "N_consv": 65813, 
        "opt_set": "rep1-pr", 
        "consv_set": "rep1-pr", 
        "rescue_ratio": 0.0, 
        "self_consistency_ratio": 1.0, 
        "reproducibility": "pass"
    }, 
    "xcor_score": [
        {
            "num_reads": 15000000, 
            "est_frag_len": 195, 
            "corr_est_frag_len": 0.119564394158793, 
            "phantom_peak": 50, 
            "corr_phantom_peak": 0.1214106, 
            "argmin_corr": 1500, 
            "min_corr": 0.114518, 
            "NSC": 1.044066, 
            "RSC": 0.7321429
        }
    ], 
    "frip_macs2_qc": {
        "rep1": {
            "FRiP": 0.156858766326
        }, 
        "rep1-pr1": {
            "FRiP": 0.17130859413
        }, 
        "rep1-pr2": {
            "FRiP": 0.172674080903
        }
    }, 
    "overlap_frip_qc": {
        "rep1-pr": {
            "FRiP": 0.0554119712273
        }
    }, 
    "jsd_qc": [
        {
            "pct_gen_enrich": 0.256457554811, 
            "auc": 0.493144227671, 
            "ch_div": 0.165335156662, 
            "elbow_pt": 4.61796699369e-182, 
            "jsd": 0.577613438255, 
            "syn_auc": 0.501454853504, 
            "syn_elbow_pt": 0.102287997341, 
            "syn_jsd": 0.279533141673
        }
    ]
}
