/EXTERNAL McGill EMC/K006133_1_lane_gembs

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SAMPLE K006133_1_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 799885498 100.00 % 399942749 100.00 % 399942749 100.00 %
General Reads 787285175 98.42 % 395986096 99.01 % 391299079 97.84 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 692567 0.09 % 348956 0.09 % 343611 0.09 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 11907756 1.49 % 3607697 0.90 % 8300059 2.08 %
Bisulfite_reads C2T 402114028 50.27 % 202141707 50.54 % 199972321 50.00 %
Bisulfite_reads G2A 385863714 48.24 % 194193345 48.56 % 191670369 47.92 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 334177169
Average Unique 83.56 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 31250110410 38.68 % 12191640250 30.18 % 19058470160 47.18 %
Base Counts Overall C 8583627691 10.62 % 471370461 1.17 % 8112257230 20.08 %
Base Counts Overall G 8699592133 10.77 % 8231750226 20.38 % 467841907 1.16 %
Base Counts Overall T 31184232418 38.60 % 19097982500 47.28 % 12086249918 29.92 %
Base Counts Overall N 1070872646 1.33 % 401474212 0.99 % 669398434 1.66 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.981576683549704
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 379739019



Mapping Quality

Mapping Quality Histogram
K006133_1_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K006133_1_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
McGill0022.Bisulfite-Seq.DNA_Methylation.EGAX00001272941.fastq_MS002201