/EXTERNAL McGill EMC/mapping_coverage/K006133_1_lane_gembs
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SAMPLE K006133_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
780281764 |
100% |
71916712738 |
100% |
| Mapped |
772012650 |
98.94 % |
71089801338 |
98.85 % |
| Passed |
658690521 |
84.42 % |
59757588438 |
83.09 % |
| NotPassed |
113322129 |
14.52 % |
11332212900 |
15.76 % |
| |
|
|
|
|
| LowMAPQ |
93234612 |
11.95 % |
9323461200 |
12.96 % |
| MateUnmapped |
8269114 |
1.06 % |
826911400 |
1.15 % |
| Duplicate |
7020242 |
0.90 % |
702024200 |
0.98 % |
| BadOrientation |
16 |
0.00 % |
1600 |
0.00 % |
| LargeInsertSize |
53652 |
0.01 % |
5365200 |
0.01 % |
| |
|
|
|
|
| NotCorrectlyAligned |
13013607 |
1.67 % |
1301360700 |
1.81 % |
| Unmapped |
8269114 |
1.06 % |
826911400 |
1.15 % |
Base Level Counts
| Bases |
# |
% |
| Total |
65859821600 |
100% |
| Passed |
55575606026 |
84.38 % |
| Trimmed |
2975390050 |
4.52 % |
| Clipped |
251574726 |
0.38 % |
| Overlapping |
5850658436 |
8.88 % |
| LowQuality |
1206592362 |
1.83 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |