/EXTERNAL McGill EMC/methylation/K006133_1_lane_gembs

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SAMPLE K006133_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26571167 20190584 75.99 %
NonRefCpG 248984 163389 65.62 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006133_1_lane_gembs_coverage_refCpG.png ./IMG//K006133_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006133_1_lane_gembs_coverage_nonRefCpG.png ./IMG//K006133_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006133_1_lane_gembs_quality_refcpg.png ./IMG//K006133_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006133_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 6448820 12.34 % 4215546 9.62 % 41034 8.66 % 18055 5.04 %
Intermediate (0.3-0.7) 13114871 25.10 % 10135197 23.12 % 127678 26.96 % 84770 23.67 %
Methylated (0.7-1) 32696497 62.56 % 29479111 67.26 % 304949 64.38 % 255352 71.29 %
Median Methylation 0.790 0.810 0.790 0.830