{
    "name": "Untitled", 
    "desc": "No description", 
    "flagstat_qc": [
        {
            "total": 129563068, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 126896793, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 97.94, 
            "paired": 129563068, 
            "paired_qc_failed": 0, 
            "read1": 64781534, 
            "read1_qc_failed": 0, 
            "read2": 64781534, 
            "read2_qc_failed": 0, 
            "paired_properly": 125449142, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 96.82, 
            "with_itself": 126080876, 
            "with_itself_qc_failed": 0, 
            "singletons": 815917, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.63, 
            "diff_chroms": 246362, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "ctl_flagstat_qc": [
        {
            "total": 125060354, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 115723438, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 92.53, 
            "paired": 125060354, 
            "paired_qc_failed": 0, 
            "read1": 62530177, 
            "read1_qc_failed": 0, 
            "read2": 62530177, 
            "read2_qc_failed": 0, 
            "paired_properly": 106455838, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 85.12, 
            "with_itself": 108232133, 
            "with_itself_qc_failed": 0, 
            "singletons": 7491305, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 5.99, 
            "diff_chroms": 1197687, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "dup_qc": [
        {
            "unpaired_reads": 0, 
            "paired_reads": 55057808, 
            "unmapped_reads": 0, 
            "unpaired_dupes": 0, 
            "paired_dupes": 2257069, 
            "paired_opt_dupes": 3616, 
            "dupes_pct": 0.040995
        }
    ], 
    "ctl_dup_qc": [
        {
            "unpaired_reads": 0, 
            "paired_reads": 42322259, 
            "unmapped_reads": 0, 
            "unpaired_dupes": 0, 
            "paired_dupes": 491414, 
            "paired_opt_dupes": 3358, 
            "dupes_pct": 0.011611
        }
    ], 
    "pbc_qc": [
        {
            "total_read_pairs": 55056447, 
            "distinct_read_pairs": 52799431, 
            "one_read_pair": 50646313, 
            "two_read_pair": 2063980, 
            "NRF": 0.959005, 
            "PBC1": 0.959221, 
            "PBC2": 24.53818
        }
    ], 
    "ctl_pbc_qc": [
        {
            "total_read_pairs": 42292180, 
            "distinct_read_pairs": 41801358, 
            "one_read_pair": 41322447, 
            "two_read_pair": 470042, 
            "NRF": 0.988394, 
            "PBC1": 0.988543, 
            "PBC2": 87.912244
        }
    ], 
    "nodup_flagstat_qc": [
        {
            "total": 105601478, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 105601478, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 100.0, 
            "paired": 105601478, 
            "paired_qc_failed": 0, 
            "read1": 52800739, 
            "read1_qc_failed": 0, 
            "read2": 52800739, 
            "read2_qc_failed": 0, 
            "paired_properly": 105601478, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 100.0, 
            "with_itself": 105601478, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "ctl_nodup_flagstat_qc": [
        {
            "total": 83661690, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 83661690, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 100.0, 
            "paired": 83661690, 
            "paired_qc_failed": 0, 
            "read1": 41830845, 
            "read1_qc_failed": 0, 
            "read2": 41830845, 
            "read2_qc_failed": 0, 
            "paired_properly": 83661690, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 100.0, 
            "with_itself": 83661690, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "overlap_reproducibility_qc": {
        "Nt": 0, 
        "N1": 38202, 
        "Np": 0, 
        "N_opt": 38202, 
        "N_consv": 38202, 
        "opt_set": "rep1-pr", 
        "consv_set": "rep1-pr", 
        "rescue_ratio": 0.0, 
        "self_consistency_ratio": 1.0, 
        "reproducibility": "pass"
    }, 
    "xcor_score": [
        {
            "num_reads": 15000000, 
            "est_frag_len": 110, 
            "corr_est_frag_len": 0.175234042394749, 
            "phantom_peak": 50, 
            "corr_phantom_peak": 0.1885494, 
            "argmin_corr": 1500, 
            "min_corr": 0.1701246, 
            "NSC": 1.030034, 
            "RSC": 0.2773147
        }
    ], 
    "frip_macs2_qc": {
        "rep1": {
            "FRiP": 0.0511607786076
        }, 
        "rep1-pr1": {
            "FRiP": 0.0894406591344
        }, 
        "rep1-pr2": {
            "FRiP": 0.0897666698296
        }
    }, 
    "overlap_frip_qc": {
        "rep1-pr": {
            "FRiP": 0.0380716413402
        }
    }, 
    "jsd_qc": [
        {
            "pct_gen_enrich": 0.332726852523, 
            "auc": 0.496026433054, 
            "ch_div": 0.100370662114, 
            "elbow_pt": 0.0, 
            "jsd": 0.500251906291, 
            "syn_auc": 0.501873579131, 
            "syn_elbow_pt": 0.0507312977, 
            "syn_jsd": 0.200234196032
        }
    ]
}
