/EXTERNAL McGill EMC/K006136_1_lane_gembs

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SAMPLE K006136_1_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 831607796 100.00 % 415803898 100.00 % 415803898 100.00 %
General Reads 808582806 97.23 % 406140090 97.68 % 402442716 96.79 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 333609 0.04 % 167774 0.04 % 165835 0.04 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 22691381 2.73 % 9496034 2.28 % 13195347 3.17 %
Bisulfite_reads C2T 417384611 50.19 % 209645660 50.42 % 207738951 49.96 %
Bisulfite_reads G2A 391531804 47.08 % 196662204 47.30 % 194869600 46.87 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 307329879
Average Unique 73.91 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 31948199564 38.04 % 14306929414 34.07 % 17641270150 42.01 %
Base Counts Overall C 9805195788 11.67 % 829558296 1.98 % 8975637492 21.37 %
Base Counts Overall G 10130867316 12.06 % 9230680096 21.98 % 900187220 2.14 %
Base Counts Overall T 31244026879 37.20 % 17210383558 40.98 % 14033643321 33.42 %
Base Counts Overall N 864097849 1.03 % 418642334 1.00 % 445455515 1.06 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9414226712341649
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 377805074



Mapping Quality

Mapping Quality Histogram
K006136_1_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K006136_1_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
McGill0025.Bisulfite-Seq.DNA_Methylation.EGAX00001272968.fastq_MS002501