/EXTERNAL McGill EMC/mapping_coverage/K006136_1_lane_gembs
BACK
SAMPLE K006136_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
791692087 |
100% |
70884422475 |
100% |
| Mapped |
779895032 |
98.51 % |
69704716975 |
98.34 % |
| Passed |
586261685 |
74.05 % |
50341382275 |
71.02 % |
| NotPassed |
193633347 |
24.46 % |
19363334700 |
27.32 % |
| |
|
|
|
|
| LowMAPQ |
157188970 |
19.85 % |
15718897000 |
22.18 % |
| MateUnmapped |
11797055 |
1.49 % |
1179705500 |
1.66 % |
| Duplicate |
17015948 |
2.15 % |
1701594800 |
2.40 % |
| BadOrientation |
108 |
0.00 % |
10800 |
0.00 % |
| LargeInsertSize |
411250 |
0.05 % |
41125000 |
0.06 % |
| |
|
|
|
|
| NotCorrectlyAligned |
19017071 |
2.40 % |
1901707100 |
2.68 % |
| Unmapped |
11797055 |
1.49 % |
1179705500 |
1.66 % |
Base Level Counts
| Bases |
# |
% |
| Total |
58607708900 |
100% |
| Passed |
46719610619 |
79.72 % |
| Trimmed |
2606781304 |
4.45 % |
| Clipped |
124582317 |
0.21 % |
| Overlapping |
8141744308 |
13.89 % |
| LowQuality |
1014990352 |
1.73 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |