/EXTERNAL McGill EMC/methylation/K006136_1_lane_gembs

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SAMPLE K006136_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26363519 15041042 57.05 %
NonRefCpG 292066 123787 42.38 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006136_1_lane_gembs_coverage_refCpG.png ./IMG//K006136_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006136_1_lane_gembs_coverage_nonRefCpG.png ./IMG//K006136_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006136_1_lane_gembs_quality_refcpg.png ./IMG//K006136_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006136_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 4410032 8.88 % 953342 2.91 % 75289 13.96 % 16189 5.33 %
Intermediate (0.3-0.7) 11411922 22.98 % 5651571 17.26 % 136362 25.28 % 57940 19.08 %
Methylated (0.7-1) 33839300 68.14 % 26143720 79.83 % 327858 60.77 % 229541 75.59 %
Median Methylation 0.820 0.870 0.780 0.860