/EXTERNAL McGill EMC/K006138_1_lane_gembs

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SAMPLE K006138_1_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 847047726 100.00 % 423523863 100.00 % 423523863 100.00 %
General Reads 765876070 90.42 % 385251987 90.96 % 380624083 89.87 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 48026 0.01 % 24127 0.01 % 23899 0.01 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 81123630 9.58 % 38247749 9.03 % 42875881 10.12 %
Bisulfite_reads C2T 393678194 46.48 % 198010487 46.75 % 195667707 46.20 %
Bisulfite_reads G2A 372245902 43.95 % 187265627 44.22 % 184980275 43.68 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 229899887
Average Unique 54.28 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 31182482982 36.45 % 12154649297 28.41 % 19027833685 44.48 %
Base Counts Overall C 11225916237 13.12 % 1398901566 3.27 % 9827014671 22.97 %
Base Counts Overall G 11212930104 13.11 % 9929791397 23.21 % 1283138707 3.00 %
Base Counts Overall T 31010091981 36.25 % 18865971175 44.10 % 12144120806 28.39 %
Base Counts Overall N 920399022 1.08 % 426596728 1.00 % 493802294 1.15 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9853341519492461
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 330561787



Mapping Quality

Mapping Quality Histogram
K006138_1_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K006138_1_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
McGill0096.Bisulfite-Seq.DNA_Methylation.EGAX00001425192.release_6