/EXTERNAL McGill EMC/mapping_coverage/K006138_1_lane_gembs
BACK
SAMPLE K006138_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
738382482 |
100% |
68382278453 |
100% |
| Mapped |
725326577 |
98.23 % |
67076687953 |
98.09 % |
| Passed |
417700421 |
56.57 % |
36314072353 |
53.10 % |
| NotPassed |
307626156 |
41.66 % |
30762615600 |
44.99 % |
| |
|
|
|
|
| LowMAPQ |
204997318 |
27.76 % |
20499731800 |
29.98 % |
| MateUnmapped |
13055905 |
1.77 % |
1305590500 |
1.91 % |
| Duplicate |
27629683 |
3.74 % |
2762968300 |
4.04 % |
| BadOrientation |
20 |
0.00 % |
2000 |
0.00 % |
| LargeInsertSize |
634690 |
0.09 % |
63469000 |
0.09 % |
| |
|
|
|
|
| NotCorrectlyAligned |
74364445 |
10.07 % |
7436444500 |
10.87 % |
| Unmapped |
13055905 |
1.77 % |
1305590500 |
1.91 % |
Base Level Counts
| Bases |
# |
% |
| Total |
41761719100 |
100% |
| Passed |
33905146996 |
81.19 % |
| Trimmed |
1828925293 |
4.38 % |
| Clipped |
151417417 |
0.36 % |
| Overlapping |
5296229330 |
12.68 % |
| LowQuality |
580000064 |
1.39 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |