/EXTERNAL McGill EMC/methylation/K006138_1_lane_gembs

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SAMPLE K006138_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 24397391 12415903 50.89 %
NonRefCpG 326757 85512 26.17 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006138_1_lane_gembs_coverage_refCpG.png ./IMG//K006138_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006138_1_lane_gembs_coverage_nonRefCpG.png ./IMG//K006138_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006138_1_lane_gembs_quality_refcpg.png ./IMG//K006138_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006138_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 6691787 14.02 % 3206090 10.36 % 146062 24.36 % 20757 8.37 %
Intermediate (0.3-0.7) 12580509 26.35 % 6756165 21.83 % 172412 28.75 % 57344 23.12 %
Methylated (0.7-1) 28464270 59.63 % 20991049 67.82 % 281183 46.89 % 169922 68.51 %
Median Methylation 0.770 0.810 0.660 0.820