/EXTERNAL McGill EMC/K006139_1_lane_gembs

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SAMPLE K006139_1_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 570051826 100.00 % 285025913 100.00 % 285025913 100.00 %
General Reads 494055091 86.67 % 251510149 88.24 % 242544942 85.10 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 606 0.00 % 310 0.00 % 296 0.00 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 75996129 13.33 % 33515454 11.76 % 42480675 14.90 %
Bisulfite_reads C2T 252387273 44.27 % 128451324 45.07 % 123935949 43.48 %
Bisulfite_reads G2A 241668424 42.39 % 123059135 43.17 % 118609289 41.61 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 194368959
Average Unique 68.19 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 21453963334 37.26 % 8752879939 30.41 % 12701083395 44.12 %
Base Counts Overall C 7001641742 12.16 % 1054274252 3.66 % 5947367490 20.66 %
Base Counts Overall G 7058421213 12.26 % 6027421702 20.94 % 1030999511 3.58 %
Base Counts Overall T 21338589680 37.06 % 12666621008 44.00 % 8671968672 30.12 %
Base Counts Overall N 722618457 1.26 % 286420312 0.99 % 436198145 1.52 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate -0.016654891792351464
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 230474821



Mapping Quality

Mapping Quality Histogram
K006139_1_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K006139_1_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
McGill0103.Bisulfite-Seq.DNA_Methylation.EGAX00001425209.release_6