/EXTERNAL McGill EMC/methylation/K006139_1_lane_gembs

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SAMPLE K006139_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 25331031 2731178 10.78 %
NonRefCpG 538826 16978 3.15 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006139_1_lane_gembs_coverage_refCpG.png ./IMG//K006139_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006139_1_lane_gembs_coverage_nonRefCpG.png ./IMG//K006139_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006139_1_lane_gembs_quality_refcpg.png ./IMG//K006139_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006139_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 5451514 12.33 % 178636 2.48 % 330910 35.15 % 5405 8.23 %
Intermediate (0.3-0.7) 13754139 31.10 % 1345432 18.68 % 302122 32.09 % 13762 20.94 %
Methylated (0.7-1) 25022328 56.58 % 5679344 78.84 % 308356 32.76 % 46549 70.83 %
Median Methylation 0.750 0.860 0.480 0.840