/EXTERNAL McGill EMC/methylation/K006140_1_lane_gembs

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SAMPLE K006140_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26548819 19704230 74.22 %
NonRefCpG 184733 102798 55.65 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006140_1_lane_gembs_coverage_refCpG.png ./IMG//K006140_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006140_1_lane_gembs_coverage_nonRefCpG.png ./IMG//K006140_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006140_1_lane_gembs_quality_refcpg.png ./IMG//K006140_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006140_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 5960770 11.46 % 3514509 8.26 % 35484 10.32 % 9678 4.17 %
Intermediate (0.3-0.7) 11003695 21.15 % 7968292 18.72 % 86683 25.21 % 46786 20.16 %
Methylated (0.7-1) 35054007 67.39 % 31080771 73.02 % 221740 64.48 % 175558 75.66 %
Median Methylation 0.810 0.840 0.790 0.840