/EXTERNAL McGill EMC/K006141_1_lane_gembs

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SAMPLE K006141_1_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1108961994 100.00 % 554480997 100.00 % 554480997 100.00 %
General Reads 1078914735 97.29 % 542191192 97.78 % 536723543 96.80 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 2483153 0.22 % 1249923 0.23 % 1233230 0.22 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 27564106 2.49 % 11039882 1.99 % 16524224 2.98 %
Bisulfite_reads C2T 552594791 49.83 % 277682816 50.08 % 274911975 49.58 %
Bisulfite_reads G2A 528803097 47.68 % 265758299 47.93 % 263044798 47.44 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 453002347
Average Unique 81.70 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 43655226275 38.98 % 18545067351 33.11 % 25110158924 44.84 %
Base Counts Overall C 11784814267 10.52 % 666575654 1.19 % 11118238613 19.85 %
Base Counts Overall G 12078476501 10.78 % 11393532677 20.34 % 684943824 1.22 %
Base Counts Overall T 43346702652 38.70 % 24838771991 44.35 % 18507930661 33.05 %
Base Counts Overall N 1139941699 1.02 % 558633024 1.00 % 581308675 1.04 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9715428192314074
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 518361684



Mapping Quality

Mapping Quality Histogram
K006141_1_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K006141_1_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
McGill0011.Bisulfite-Seq.DNA_Methylation.EGAX00001272876.fastq_MS001101