/EXTERNAL McGill EMC/mapping_coverage/K006141_1_lane_gembs
BACK
SAMPLE K006141_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
955384810 |
100% |
90488431936 |
100% |
| Mapped |
942258257 |
98.63 % |
89175776636 |
98.55 % |
| Passed |
662909494 |
69.39 % |
61240900336 |
67.68 % |
| NotPassed |
279348763 |
29.24 % |
27934876300 |
30.87 % |
| |
|
|
|
|
| LowMAPQ |
144207246 |
15.09 % |
14420724600 |
15.94 % |
| MateUnmapped |
13126553 |
1.37 % |
1312655300 |
1.45 % |
| Duplicate |
123901381 |
12.97 % |
12390138100 |
13.69 % |
| BadOrientation |
70 |
0.00 % |
7000 |
0.00 % |
| LargeInsertSize |
7642 |
0.00 % |
764200 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
11232424 |
1.18 % |
1123242400 |
1.24 % |
| Unmapped |
13126553 |
1.37 % |
1312655300 |
1.45 % |
Base Level Counts
| Bases |
# |
% |
| Total |
66258084400 |
100% |
| Passed |
56360955756 |
85.06 % |
| Trimmed |
3066530821 |
4.63 % |
| Clipped |
133501466 |
0.20 % |
| Overlapping |
4883682598 |
7.37 % |
| LowQuality |
1813413759 |
2.74 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |