/EXTERNAL McGill EMC/methylation/K006141_1_lane_gembs

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SAMPLE K006141_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26578515 17475392 65.75 %
NonRefCpG 274081 150632 54.96 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006141_1_lane_gembs_coverage_refCpG.png ./IMG//K006141_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006141_1_lane_gembs_coverage_nonRefCpG.png ./IMG//K006141_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006141_1_lane_gembs_quality_refcpg.png ./IMG//K006141_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006141_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 4687030 9.16 % 1329179 3.52 % 52099 10.18 % 13170 3.85 %
Intermediate (0.3-0.7) 11280619 22.05 % 6697753 17.76 % 121708 23.78 % 63044 18.42 %
Methylated (0.7-1) 35188643 68.79 % 29684817 78.72 % 338008 66.04 % 266073 77.73 %
Median Methylation 0.830 0.870 0.810 0.860