/EXTERNAL McGill EMC/K006142_1_lane_gembs/McGill0027.Bisulfite-Seq.DNA_Methylation.EGAX00001425129.release_6

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SAMPLE K006142_1_lane_gembs LANE McGill0027.Bisulfite-Seq.DNA_Methylation.EGAX00001425129.release_6

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 737480676 100.00 % 368740338 100.00 % 368740338 100.00 %
General Reads 709476845 96.20 % 356207803 96.60 % 353269042 95.80 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 776334 0.11 % 390502 0.11 % 385832 0.10 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 27227497 3.69 % 12142033 3.29 % 15085464 4.09 %
Bisulfite_reads C2T 364225400 49.39 % 182873260 49.59 % 181352140 49.18 %
Bisulfite_reads G2A 346027779 46.92 % 173725045 47.11 % 172302734 46.73 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 293079809
Average Unique 79.48 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 28926539435 38.84 % 11643433769 31.26 % 17283105666 46.41 %
Base Counts Overall C 8111195844 10.89 % 580292683 1.56 % 7530903161 20.22 %
Base Counts Overall G 8232442712 11.05 % 7594972352 20.39 % 637470360 1.71 %
Base Counts Overall T 28402869952 38.13 % 17036840489 45.75 % 11366029463 30.52 %
Base Counts Overall N 812500333 1.09 % 387234845 1.04 % 425265488 1.14 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9809725138011384
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 338234252



Mapping Quality

Mapping Quality Histogram
McGill0027.Bisulfite-Seq.DNA_Methylation.EGAX00001425129.release_6.mapq.png



Read Length

Read Length Reads
100 368740338
100 368740338



Insert Size Plot

Insert Size Histogram
McGill0027.Bisulfite-Seq.DNA_Methylation.EGAX00001425129.release_6.isize.png