/EXTERNAL McGill EMC/mapping_coverage/K006142_1_lane_gembs
BACK
SAMPLE K006142_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
689319044 |
100% |
61594038555 |
100% |
| Mapped |
678533101 |
98.44 % |
60515444255 |
98.25 % |
| Passed |
550059723 |
79.80 % |
47668106455 |
77.39 % |
| NotPassed |
128473378 |
18.64 % |
12847337800 |
20.86 % |
| |
|
|
|
|
| LowMAPQ |
98350618 |
14.27 % |
9835061800 |
15.97 % |
| MateUnmapped |
10785943 |
1.56 % |
1078594300 |
1.75 % |
| Duplicate |
20261452 |
2.94 % |
2026145200 |
3.29 % |
| BadOrientation |
18 |
0.00 % |
1800 |
0.00 % |
| LargeInsertSize |
79488 |
0.01 % |
7948800 |
0.01 % |
| |
|
|
|
|
| NotCorrectlyAligned |
9781802 |
1.42 % |
978180200 |
1.59 % |
| Unmapped |
10785943 |
1.56 % |
1078594300 |
1.75 % |
Base Level Counts
| Bases |
# |
% |
| Total |
54993798900 |
100% |
| Passed |
44079593235 |
80.15 % |
| Trimmed |
2440220971 |
4.44 % |
| Clipped |
79588808 |
0.14 % |
| Overlapping |
7246103637 |
13.18 % |
| LowQuality |
1148292249 |
2.09 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |