/EXTERNAL McGill EMC/methylation/K006142_1_lane_gembs

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SAMPLE K006142_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 25974842 15017000 57.81 %
NonRefCpG 275825 127803 46.33 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006142_1_lane_gembs_coverage_refCpG.png ./IMG//K006142_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006142_1_lane_gembs_coverage_nonRefCpG.png ./IMG//K006142_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006142_1_lane_gembs_quality_refcpg.png ./IMG//K006142_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006142_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 5700011 11.32 % 1617452 4.75 % 68576 13.25 % 13940 4.56 %
Intermediate (0.3-0.7) 11419928 22.69 % 6223838 18.30 % 127288 24.60 % 58144 19.01 %
Methylated (0.7-1) 33211641 65.99 % 26177148 76.95 % 321624 62.15 % 233798 76.43 %
Median Methylation 0.810 0.850 0.790 0.850