/EXTERNAL McGill EMC/K006143_1_lane_gembs/McGill0022.Bisulfite-Seq.DNA_Methylation.EGAX00001272950.fastq_MS002202

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SAMPLE K006143_1_lane_gembs LANE McGill0022.Bisulfite-Seq.DNA_Methylation.EGAX00001272950.fastq_MS002202

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 776882358 100.00 % 388441179 100.00 % 388441179 100.00 %
General Reads 765162928 98.49 % 384306523 98.94 % 380856405 98.05 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 1016753 0.13 % 511050 0.13 % 505703 0.13 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 10702677 1.38 % 3623606 0.93 % 7079071 1.82 %
Bisulfite_reads C2T 390191470 50.23 % 195938306 50.44 % 194253164 50.01 %
Bisulfite_reads G2A 375988211 48.40 % 188879267 48.62 % 187108944 48.17 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 325340670
Average Unique 83.76 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 30502261712 38.87 % 11891076457 30.31 % 18611185255 47.44 %
Base Counts Overall C 8324452489 10.61 % 363559375 0.93 % 7960893114 20.29 %
Base Counts Overall G 8397309825 10.70 % 8031574034 20.47 % 365735791 0.93 %
Base Counts Overall T 30383192192 38.72 % 18554278098 47.29 % 11828914094 30.15 %
Base Counts Overall N 857901940 1.09 % 392071115 1.00 % 465830825 1.19 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9952764254366994
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 368735623



Mapping Quality

Mapping Quality Histogram
McGill0022.Bisulfite-Seq.DNA_Methylation.EGAX00001272950.fastq_MS002202.mapq.png



Read Length

Read Length Reads
100 388441179
100 388441179



Insert Size Plot

Insert Size Histogram
McGill0022.Bisulfite-Seq.DNA_Methylation.EGAX00001272950.fastq_MS002202.isize.png