/EXTERNAL McGill EMC/mapping_coverage/K006143_1_lane_gembs
BACK
SAMPLE K006143_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
756242697 |
100% |
69437708870 |
100% |
| Mapped |
749238270 |
99.07 % |
68737266170 |
98.99 % |
| Passed |
636498607 |
84.17 % |
57463299870 |
82.76 % |
| NotPassed |
112739663 |
14.91 % |
11273966300 |
16.24 % |
| |
|
|
|
|
| LowMAPQ |
92241216 |
12.20 % |
9224121600 |
13.28 % |
| MateUnmapped |
7004427 |
0.93 % |
700442700 |
1.01 % |
| Duplicate |
8950126 |
1.18 % |
895012600 |
1.29 % |
| BadOrientation |
24 |
0.00 % |
2400 |
0.00 % |
| LargeInsertSize |
52844 |
0.01 % |
5284400 |
0.01 % |
| |
|
|
|
|
| NotCorrectlyAligned |
11495453 |
1.52 % |
1149545300 |
1.66 % |
| Unmapped |
7004427 |
0.93 % |
700442700 |
1.01 % |
Base Level Counts
| Bases |
# |
% |
| Total |
63635968600 |
100% |
| Passed |
53428438972 |
83.96 % |
| Trimmed |
2885552539 |
4.53 % |
| Clipped |
116946882 |
0.18 % |
| Overlapping |
6055721848 |
9.52 % |
| LowQuality |
1149308359 |
1.81 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |