/EXTERNAL McGill EMC/methylation/K006143_1_lane_gembs

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SAMPLE K006143_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26555569 19898705 74.93 %
NonRefCpG 251166 162263 64.60 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006143_1_lane_gembs_coverage_refCpG.png ./IMG//K006143_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006143_1_lane_gembs_coverage_nonRefCpG.png ./IMG//K006143_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006143_1_lane_gembs_quality_refcpg.png ./IMG//K006143_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006143_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 6240260 11.96 % 3854001 8.89 % 39437 8.28 % 14964 4.20 %
Intermediate (0.3-0.7) 12123730 23.23 % 9125570 21.06 % 117374 24.63 % 74306 20.84 %
Methylated (0.7-1) 33821291 64.81 % 30359897 70.05 % 319702 67.09 % 267322 74.97 %
Median Methylation 0.800 0.830 0.810 0.840