/EXTERNAL McGill EMC/K006144_1_lane_gembs/McGill0033.Bisulfite-Seq.DNA_Methylation.EGAX00001273023.fastq_MS003301

BACK

SAMPLE K006144_1_lane_gembs LANE McGill0033.Bisulfite-Seq.DNA_Methylation.EGAX00001273023.fastq_MS003301

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 318365800 100.00 % 159182900 100.00 % 159182900 100.00 %
General Reads 291362859 91.52 % 145827063 91.61 % 145535796 91.43 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 975725 0.31 % 489089 0.31 % 486636 0.31 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 26027216 8.18 % 12866748 8.08 % 13160468 8.27 %
Bisulfite_reads C2T 148573105 46.67 % 74362271 46.71 % 74210834 46.62 %
Bisulfite_reads G2A 143765479 45.16 % 71953881 45.20 % 71811598 45.11 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 113960178
Average Unique 71.59 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 12349259379 38.41 % 4899485466 30.47 % 7449773913 46.34 %
Base Counts Overall C 3749413683 11.66 % 430927990 2.68 % 3318485693 20.64 %
Base Counts Overall G 3800788345 11.82 % 3332123127 20.73 % 468665218 2.92 %
Base Counts Overall T 11924279433 37.08 % 7249880841 45.09 % 4674398592 29.07 %
Base Counts Overall N 331204960 1.03 % 165055476 1.03 % 166149484 1.03 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9925668027465188
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 131444873



Mapping Quality

Mapping Quality Histogram
McGill0033.Bisulfite-Seq.DNA_Methylation.EGAX00001273023.fastq_MS003301.mapq.png



Read Length

Read Length Reads
100 159182900
100 159182900



Insert Size Plot

Insert Size Histogram
McGill0033.Bisulfite-Seq.DNA_Methylation.EGAX00001273023.fastq_MS003301.isize.png