/EXTERNAL McGill EMC/mapping_coverage/K006144_1_lane_gembs
BACK
SAMPLE K006144_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
279054466 |
100% |
25114584148 |
100% |
| Mapped |
276176821 |
98.97 % |
24826819648 |
98.85 % |
| Passed |
204562592 |
73.31 % |
17665396748 |
70.34 % |
| NotPassed |
71614229 |
25.66 % |
7161422900 |
28.51 % |
| |
|
|
|
|
| LowMAPQ |
48219830 |
17.28 % |
4821983000 |
19.20 % |
| MateUnmapped |
2877645 |
1.03 % |
287764500 |
1.15 % |
| Duplicate |
12475163 |
4.47 % |
1247516300 |
4.97 % |
| BadOrientation |
30 |
0.00 % |
3000 |
0.00 % |
| LargeInsertSize |
3312 |
0.00 % |
331200 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
10915894 |
3.91 % |
1091589400 |
4.35 % |
| Unmapped |
2877645 |
1.03 % |
287764500 |
1.15 % |
Base Level Counts
| Bases |
# |
% |
| Total |
20408551600 |
100% |
| Passed |
16417448555 |
80.44 % |
| Trimmed |
910394742 |
4.46 % |
| Clipped |
43590693 |
0.21 % |
| Overlapping |
2699564159 |
13.23 % |
| LowQuality |
337553451 |
1.65 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |