/EXTERNAL McGill EMC/methylation/K006144_1_lane_gembs

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SAMPLE K006144_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 25947809 1800008 6.94 %
NonRefCpG 362343 10945 3.02 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006144_1_lane_gembs_coverage_refCpG.png ./IMG//K006144_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006144_1_lane_gembs_coverage_nonRefCpG.png ./IMG//K006144_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006144_1_lane_gembs_quality_refcpg.png ./IMG//K006144_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006144_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 7715029 16.60 % 232571 4.25 % 167095 25.92 % 2813 6.03 %
Intermediate (0.3-0.7) 15791594 33.98 % 1156639 21.14 % 220831 34.25 % 10307 22.08 %
Methylated (0.7-1) 22971491 49.42 % 4081817 74.61 % 256788 39.83 % 33560 71.89 %
Median Methylation 0.690 0.850 0.590 0.840