/EXTERNAL McGill EMC/K006145_1_lane_gembs

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SAMPLE K006145_1_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 395530298 100.00 % 197765149 100.00 % 197765149 100.00 %
General Reads 384064834 97.10 % 193244453 97.71 % 190820381 96.49 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 368298 0.09 % 185410 0.09 % 182888 0.09 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 11097166 2.81 % 4335286 2.19 % 6761880 3.42 %
Bisulfite_reads C2T 197730102 49.99 % 99481981 50.30 % 98248121 49.68 %
Bisulfite_reads G2A 186703030 47.20 % 93947882 47.50 % 92755148 46.90 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 149574932
Average Unique 75.63 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 15531994671 38.88 % 6572516678 32.90 % 8959477993 44.86 %
Base Counts Overall C 4272604435 10.70 % 304538624 1.52 % 3968065811 19.87 %
Base Counts Overall G 4438624268 11.11 % 4102936407 20.54 % 335687861 1.68 %
Base Counts Overall T 15275327793 38.24 % 8794653209 44.03 % 6480674584 32.45 %
Base Counts Overall N 430008931 1.08 % 199635131 1.00 % 230373800 1.15 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9732496254676898
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 175322391



Mapping Quality

Mapping Quality Histogram
K006145_1_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K006145_1_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
McGill0079.Bisulfite-Seq.DNA_Methylation.EGAX00001425178.release_6