/EXTERNAL McGill EMC/mapping_coverage/K006145_1_lane_gembs
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SAMPLE K006145_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
382190486 |
100% |
34231191681 |
100% |
| Mapped |
376695163 |
98.56 % |
33681659381 |
98.39 % |
| Passed |
297755744 |
77.91 % |
25787717481 |
75.33 % |
| NotPassed |
78939419 |
20.65 % |
7893941900 |
23.06 % |
| |
|
|
|
|
| LowMAPQ |
70988320 |
18.57 % |
7098832000 |
20.74 % |
| MateUnmapped |
5495323 |
1.44 % |
549532300 |
1.61 % |
| Duplicate |
1901708 |
0.50 % |
190170800 |
0.56 % |
| BadOrientation |
60 |
0.00 % |
6000 |
0.00 % |
| LargeInsertSize |
4850 |
0.00 % |
485000 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
6044481 |
1.58 % |
604448100 |
1.77 % |
| Unmapped |
5495323 |
1.44 % |
549532300 |
1.61 % |
Base Level Counts
| Bases |
# |
% |
| Total |
29744758800 |
100% |
| Passed |
23706975882 |
79.70 % |
| Trimmed |
1326694695 |
4.46 % |
| Clipped |
56347178 |
0.19 % |
| Overlapping |
3900694141 |
13.11 % |
| LowQuality |
754046904 |
2.54 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |