/EXTERNAL McGill EMC/methylation/K006145_1_lane_gembs

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SAMPLE K006145_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 25572749 5483414 21.44 %
NonRefCpG 330354 44276 13.40 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006145_1_lane_gembs_coverage_refCpG.png ./IMG//K006145_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006145_1_lane_gembs_coverage_nonRefCpG.png ./IMG//K006145_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006145_1_lane_gembs_quality_refcpg.png ./IMG//K006145_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006145_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 4752184 10.45 % 435435 3.17 % 117730 20.03 % 9438 6.84 %
Intermediate (0.3-0.7) 13495763 29.67 % 2729544 19.90 % 181665 30.91 % 30269 21.94 %
Methylated (0.7-1) 27245225 59.89 % 10550569 76.92 % 288364 49.06 % 98258 71.22 %
Median Methylation 0.770 0.860 0.690 0.840