/EXTERNAL McGill EMC/K006146_1_lane_gembs

BACK

SAMPLE K006146_1_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 477604236 100.00 % 238802118 100.00 % 238802118 100.00 %
General Reads 449263580 94.07 % 225335764 94.36 % 223927816 93.77 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 175647 0.04 % 88575 0.04 % 87072 0.04 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 28165009 5.90 % 13377779 5.60 % 14787230 6.19 %
Bisulfite_reads C2T 227249384 47.58 % 113961167 47.72 % 113288217 47.44 %
Bisulfite_reads G2A 222189843 46.52 % 111463172 46.68 % 110726671 46.37 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 157788780
Average Unique 66.08 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 27914382067 38.71 % 11145864413 30.91 % 16768517654 46.50 %
Base Counts Overall C 8249832270 11.44 % 1186309925 3.29 % 7063522345 19.59 %
Base Counts Overall G 8598822734 11.92 % 7200412139 19.97 % 1398410595 3.88 %
Base Counts Overall T 26798065800 37.16 % 16280733585 45.15 % 10517332215 29.17 %
Base Counts Overall N 557136765 0.77 % 245799756 0.68 % 311337009 0.86 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9912628528662848
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 178963939



Mapping Quality

Mapping Quality Histogram
K006146_1_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K006146_1_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
McGill0270.Bisulfite-Seq.DNA_Methylation.EGAX00001273309.fastq_MS027001