/EXTERNAL McGill EMC/mapping_coverage/K006146_1_lane_gembs
BACK
SAMPLE K006146_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
442353773 |
100% |
56435949940 |
100% |
| Mapped |
434668868 |
98.26 % |
55283214190 |
97.96 % |
| Passed |
302852196 |
68.46 % |
35510713390 |
62.92 % |
| NotPassed |
131816672 |
29.80 % |
19772500800 |
35.04 % |
| |
|
|
|
|
| LowMAPQ |
112196636 |
25.36 % |
16829495400 |
29.82 % |
| MateUnmapped |
7684905 |
1.74 % |
1152735750 |
2.04 % |
| Duplicate |
7203247 |
1.63 % |
1080487050 |
1.91 % |
| BadOrientation |
206 |
0.00 % |
30900 |
0.00 % |
| LargeInsertSize |
73402 |
0.02 % |
11010300 |
0.02 % |
| |
|
|
|
|
| NotCorrectlyAligned |
12343181 |
2.79 % |
1851477150 |
3.28 % |
| Unmapped |
7684905 |
1.74 % |
1152735750 |
2.04 % |
Base Level Counts
| Bases |
# |
% |
| Total |
45411490800 |
100% |
| Passed |
33335408482 |
73.41 % |
| Trimmed |
1287618140 |
2.84 % |
| Clipped |
238227917 |
0.52 % |
| Overlapping |
9662549493 |
21.28 % |
| LowQuality |
887686768 |
1.95 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |