/EXTERNAL McGill EMC/methylation/K006146_1_lane_gembs

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SAMPLE K006146_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26595051 12273979 46.15 %
NonRefCpG 289880 100276 34.59 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006146_1_lane_gembs_coverage_refCpG.png ./IMG//K006146_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006146_1_lane_gembs_coverage_nonRefCpG.png ./IMG//K006146_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006146_1_lane_gembs_quality_refcpg.png ./IMG//K006146_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006146_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 6248255 12.20 % 1439163 5.11 % 78044 14.44 % 10875 4.36 %
Intermediate (0.3-0.7) 12042585 23.51 % 4695785 16.68 % 136450 25.24 % 41406 16.60 %
Methylated (0.7-1) 32924664 64.29 % 22025144 78.21 % 326134 60.33 % 197226 79.05 %
Median Methylation 0.800 0.870 0.780 0.870