{
    "name": "Untitled", 
    "desc": "No description", 
    "flagstat_qc": [
        {
            "total": 92778032, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 82750197, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 89.19, 
            "paired": 92778032, 
            "paired_qc_failed": 0, 
            "read1": 46389016, 
            "read1_qc_failed": 0, 
            "read2": 46389016, 
            "read2_qc_failed": 0, 
            "paired_properly": 82134117, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 88.53, 
            "with_itself": 82414880, 
            "with_itself_qc_failed": 0, 
            "singletons": 335317, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.36, 
            "diff_chroms": 63155, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "ctl_flagstat_qc": [
        {
            "total": 139413336, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 137076202, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 98.32, 
            "paired": 139413336, 
            "paired_qc_failed": 0, 
            "read1": 69706668, 
            "read1_qc_failed": 0, 
            "read2": 69706668, 
            "read2_qc_failed": 0, 
            "paired_properly": 135724007, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 97.35, 
            "with_itself": 136521817, 
            "with_itself_qc_failed": 0, 
            "singletons": 554385, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.4, 
            "diff_chroms": 331576, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "dup_qc": [
        {
            "unpaired_reads": 0, 
            "paired_reads": 37339851, 
            "unmapped_reads": 0, 
            "unpaired_dupes": 0, 
            "paired_dupes": 17087357, 
            "paired_opt_dupes": 2185, 
            "dupes_pct": 0.457617
        }
    ], 
    "ctl_dup_qc": [
        {
            "unpaired_reads": 0, 
            "paired_reads": 59910556, 
            "unmapped_reads": 0, 
            "unpaired_dupes": 0, 
            "paired_dupes": 3644145, 
            "paired_opt_dupes": 3362, 
            "dupes_pct": 0.060826
        }
    ], 
    "pbc_qc": [
        {
            "total_read_pairs": 37338549, 
            "distinct_read_pairs": 20251824, 
            "one_read_pair": 10275545, 
            "two_read_pair": 5613824, 
            "NRF": 0.542384, 
            "PBC1": 0.507389, 
            "PBC2": 1.8304
        }
    ], 
    "ctl_pbc_qc": [
        {
            "total_read_pairs": 59868704, 
            "distinct_read_pairs": 56228098, 
            "one_read_pair": 52787644, 
            "two_read_pair": 3261892, 
            "NRF": 0.93919, 
            "PBC1": 0.938813, 
            "PBC2": 16.183137
        }
    ], 
    "nodup_flagstat_qc": [
        {
            "total": 40504988, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 40504988, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 100.0, 
            "paired": 40504988, 
            "paired_qc_failed": 0, 
            "read1": 20252494, 
            "read1_qc_failed": 0, 
            "read2": 20252494, 
            "read2_qc_failed": 0, 
            "paired_properly": 40504988, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 100.0, 
            "with_itself": 40504988, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "ctl_nodup_flagstat_qc": [
        {
            "total": 112532822, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 112532822, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 100.0, 
            "paired": 112532822, 
            "paired_qc_failed": 0, 
            "read1": 56266411, 
            "read1_qc_failed": 0, 
            "read2": 56266411, 
            "read2_qc_failed": 0, 
            "paired_properly": 112532822, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 100.0, 
            "with_itself": 112532822, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "overlap_reproducibility_qc": {
        "Nt": 0, 
        "N1": 136311, 
        "Np": 0, 
        "N_opt": 136311, 
        "N_consv": 136311, 
        "opt_set": "rep1-pr", 
        "consv_set": "rep1-pr", 
        "rescue_ratio": 0.0, 
        "self_consistency_ratio": 1.0, 
        "reproducibility": "pass"
    }, 
    "xcor_score": [
        {
            "num_reads": 15000000, 
            "est_frag_len": 140, 
            "corr_est_frag_len": 0.169620623686737, 
            "phantom_peak": 50, 
            "corr_phantom_peak": 0.1678347, 
            "argmin_corr": 1500, 
            "min_corr": 0.1503526, 
            "NSC": 1.128152, 
            "RSC": 1.102158
        }
    ], 
    "frip_macs2_qc": {
        "rep1": {
            "FRiP": 0.497296836345
        }, 
        "rep1-pr1": {
            "FRiP": 0.488009772551
        }, 
        "rep1-pr2": {
            "FRiP": 0.488393293523
        }
    }, 
    "overlap_frip_qc": {
        "rep1-pr": {
            "FRiP": 0.450720986838
        }
    }, 
    "jsd_qc": [
        {
            "pct_gen_enrich": 0.15925947172, 
            "auc": 0.493601468483, 
            "ch_div": 0.202249954017, 
            "elbow_pt": 3.0575846107e-209, 
            "jsd": 0.781186273961, 
            "syn_auc": 0.50642407983, 
            "syn_elbow_pt": 0.339339696057, 
            "syn_jsd": 0.459359086772
        }
    ]
}
