/EXTERNAL McGill EMC/K006147_1_lane_gembs

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SAMPLE K006147_1_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 767052852 100.00 % 383526426 100.00 % 383526426 100.00 %
General Reads 745920494 97.24 % 374435505 97.63 % 371484989 96.86 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 257586 0.03 % 129503 0.03 % 128083 0.03 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 20874772 2.72 % 8961418 2.34 % 11913354 3.11 %
Bisulfite_reads C2T 383477159 49.99 % 192498079 50.19 % 190979080 49.80 %
Bisulfite_reads G2A 362700921 47.28 % 182066929 47.47 % 180633992 47.10 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 298535388
Average Unique 77.84 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 29932938111 38.64 % 12225093270 31.56 % 17707844841 45.71 %
Base Counts Overall C 8430606929 10.88 % 539082284 1.39 % 7891524645 20.37 %
Base Counts Overall G 8670671280 11.19 % 8066676203 20.82 % 603995077 1.56 %
Base Counts Overall T 29593906593 38.20 % 17517834307 45.22 % 12076072286 31.18 %
Base Counts Overall N 844215139 1.09 % 387482962 1.00 % 456732177 1.18 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.961222038542961
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 348538810



Mapping Quality

Mapping Quality Histogram
K006147_1_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K006147_1_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
McGill0079.Bisulfite-Seq.DNA_Methylation.EGAX00001425177.release_6