/EXTERNAL McGill EMC/mapping_coverage/K006147_1_lane_gembs
BACK
SAMPLE K006147_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
741572219 |
100% |
65917401493 |
100% |
| Mapped |
732876662 |
98.83 % |
65047845793 |
98.68 % |
| Passed |
593055662 |
79.97 % |
51065745793 |
77.47 % |
| NotPassed |
139821000 |
18.85 % |
13982100000 |
21.21 % |
| |
|
|
|
|
| LowMAPQ |
123688220 |
16.68 % |
12368822000 |
18.76 % |
| MateUnmapped |
8695557 |
1.17 % |
869555700 |
1.32 % |
| Duplicate |
4414053 |
0.60 % |
441405300 |
0.67 % |
| BadOrientation |
82 |
0.00 % |
8200 |
0.00 % |
| LargeInsertSize |
82440 |
0.01 % |
8244000 |
0.01 % |
| |
|
|
|
|
| NotCorrectlyAligned |
11636205 |
1.57 % |
1163620500 |
1.77 % |
| Unmapped |
8695557 |
1.17 % |
869555700 |
1.32 % |
Base Level Counts
| Bases |
# |
% |
| Total |
59290770900 |
100% |
| Passed |
47706861381 |
80.46 % |
| Trimmed |
2636257080 |
4.45 % |
| Clipped |
86506227 |
0.15 % |
| Overlapping |
8138518880 |
13.73 % |
| LowQuality |
722627332 |
1.22 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |