/EXTERNAL McGill EMC/K006148_1_lane_gembs

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SAMPLE K006148_1_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 382785486 100.00 % 191392743 100.00 % 191392743 100.00 %
General Reads 372702836 97.37 % 187327456 97.88 % 185375380 96.86 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 1716283 0.45 % 863093 0.45 % 853190 0.45 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 8366367 2.19 % 3202194 1.67 % 5164173 2.70 %
Bisulfite_reads C2T 190825027 49.85 % 95900152 50.11 % 94924875 49.60 %
Bisulfite_reads G2A 183594092 47.96 % 92290397 48.22 % 91303695 47.70 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 156179469
Average Unique 81.60 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 15119158495 39.11 % 6044814218 31.27 % 9074344277 46.94 %
Base Counts Overall C 4042316829 10.46 % 189682453 0.98 % 3852634376 19.93 %
Base Counts Overall G 4054966691 10.49 % 3861477942 19.98 % 193488749 1.00 %
Base Counts Overall T 14939420082 38.64 % 8992353125 46.52 % 5947066957 30.76 %
Base Counts Overall N 505471989 1.31 % 242339305 1.25 % 263132684 1.36 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9967863891019093
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 178571481



Mapping Quality

Mapping Quality Histogram
K006148_1_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K006148_1_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
McGill0050.Bisulfite-Seq.DNA_Methylation.EGAX00001273059.fastq_MS005001