/EXTERNAL McGill EMC/mapping_coverage/K006148_1_lane_gembs
BACK
SAMPLE K006148_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
358646478 |
100% |
31602279844 |
100% |
| Mapped |
354406201 |
98.82 % |
31178252144 |
98.66 % |
| Passed |
285158989 |
79.51 % |
24253530944 |
76.75 % |
| NotPassed |
69247212 |
19.31 % |
6924721200 |
21.91 % |
| |
|
|
|
|
| LowMAPQ |
49870394 |
13.91 % |
4987039400 |
15.78 % |
| MateUnmapped |
4240277 |
1.18 % |
424027700 |
1.34 % |
| Duplicate |
14126759 |
3.94 % |
1412675900 |
4.47 % |
| BadOrientation |
8 |
0.00 % |
800 |
0.00 % |
| LargeInsertSize |
1996 |
0.00 % |
199600 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
5248055 |
1.46 % |
524805500 |
1.66 % |
| Unmapped |
4240277 |
1.18 % |
424027700 |
1.34 % |
Base Level Counts
| Bases |
# |
% |
| Total |
28505022300 |
100% |
| Passed |
22539705790 |
79.07 % |
| Trimmed |
1238418593 |
4.34 % |
| Clipped |
44003553 |
0.15 % |
| Overlapping |
4207487803 |
14.76 % |
| LowQuality |
475406561 |
1.67 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |