/EXTERNAL McGill EMC/methylation/K006148_1_lane_gembs

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SAMPLE K006148_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26113487 4117572 15.77 %
NonRefCpG 314036 30685 9.77 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006148_1_lane_gembs_coverage_refCpG.png ./IMG//K006148_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006148_1_lane_gembs_coverage_nonRefCpG.png ./IMG//K006148_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006148_1_lane_gembs_quality_refcpg.png ./IMG//K006148_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006148_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 7439935 15.40 % 577399 4.85 % 125594 21.85 % 6682 6.22 %
Intermediate (0.3-0.7) 15989749 33.10 % 2687833 22.60 % 192472 33.48 % 24877 23.17 %
Methylated (0.7-1) 24874836 51.50 % 8628563 72.55 % 256796 44.67 % 75830 70.61 %
Median Methylation 0.710 0.840 0.650 0.830