{
    "name": "Untitled", 
    "desc": "No description", 
    "flagstat_qc": [
        {
            "total": 90191170, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 85614602, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 94.93, 
            "paired": 90191170, 
            "paired_qc_failed": 0, 
            "read1": 45095585, 
            "read1_qc_failed": 0, 
            "read2": 45095585, 
            "read2_qc_failed": 0, 
            "paired_properly": 81728439, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 90.62, 
            "with_itself": 82313777, 
            "with_itself_qc_failed": 0, 
            "singletons": 3300825, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 3.66, 
            "diff_chroms": 284573, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "ctl_flagstat_qc": [
        {
            "total": 106180416, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 98634603, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 92.89, 
            "paired": 106180416, 
            "paired_qc_failed": 0, 
            "read1": 53090208, 
            "read1_qc_failed": 0, 
            "read2": 53090208, 
            "read2_qc_failed": 0, 
            "paired_properly": 91384537, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 86.07, 
            "with_itself": 92607301, 
            "with_itself_qc_failed": 0, 
            "singletons": 6027302, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 5.68, 
            "diff_chroms": 792771, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "dup_qc": [
        {
            "unpaired_reads": 0, 
            "paired_reads": 35028597, 
            "unmapped_reads": 0, 
            "unpaired_dupes": 0, 
            "paired_dupes": 5115027, 
            "paired_opt_dupes": 3700, 
            "dupes_pct": 0.146024
        }
    ], 
    "ctl_dup_qc": [
        {
            "unpaired_reads": 0, 
            "paired_reads": 37373521, 
            "unmapped_reads": 0, 
            "unpaired_dupes": 0, 
            "paired_dupes": 355831, 
            "paired_opt_dupes": 3074, 
            "dupes_pct": 0.009521
        }
    ], 
    "pbc_qc": [
        {
            "total_read_pairs": 35026851, 
            "distinct_read_pairs": 29912042, 
            "one_read_pair": 25542441, 
            "two_read_pair": 3729364, 
            "NRF": 0.853975, 
            "PBC1": 0.853918, 
            "PBC2": 6.849007
        }
    ], 
    "ctl_pbc_qc": [
        {
            "total_read_pairs": 37338415, 
            "distinct_read_pairs": 36983246, 
            "one_read_pair": 36645916, 
            "two_read_pair": 328129, 
            "NRF": 0.990488, 
            "PBC1": 0.990879, 
            "PBC2": 111.68143
        }
    ], 
    "nodup_flagstat_qc": [
        {
            "total": 59827140, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 59827140, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 100.0, 
            "paired": 59827140, 
            "paired_qc_failed": 0, 
            "read1": 29913570, 
            "read1_qc_failed": 0, 
            "read2": 29913570, 
            "read2_qc_failed": 0, 
            "paired_properly": 59827140, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 100.0, 
            "with_itself": 59827140, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "ctl_nodup_flagstat_qc": [
        {
            "total": 74035380, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 74035380, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 100.0, 
            "paired": 74035380, 
            "paired_qc_failed": 0, 
            "read1": 37017690, 
            "read1_qc_failed": 0, 
            "read2": 37017690, 
            "read2_qc_failed": 0, 
            "paired_properly": 74035380, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 100.0, 
            "with_itself": 74035380, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "overlap_reproducibility_qc": {
        "Nt": 0, 
        "N1": 72349, 
        "Np": 0, 
        "N_opt": 72349, 
        "N_consv": 72349, 
        "opt_set": "rep1-pr", 
        "consv_set": "rep1-pr", 
        "rescue_ratio": 0.0, 
        "self_consistency_ratio": 1.0, 
        "reproducibility": "pass"
    }, 
    "xcor_score": [
        {
            "num_reads": 15000000, 
            "est_frag_len": 135, 
            "corr_est_frag_len": 0.195391832344113, 
            "phantom_peak": 50, 
            "corr_phantom_peak": 0.1957853, 
            "argmin_corr": 1500, 
            "min_corr": 0.1720643, 
            "NSC": 1.135574, 
            "RSC": 0.9834122
        }
    ], 
    "frip_macs2_qc": {
        "rep1": {
            "FRiP": 0.277383744735
        }, 
        "rep1-pr1": {
            "FRiP": 0.276227127775
        }, 
        "rep1-pr2": {
            "FRiP": 0.276433350822
        }
    }, 
    "overlap_frip_qc": {
        "rep1-pr": {
            "FRiP": 0.236519735546
        }
    }, 
    "jsd_qc": [
        {
            "pct_gen_enrich": 0.234820582483, 
            "auc": 0.494717606533, 
            "ch_div": 0.117201338713, 
            "elbow_pt": 8.94584266925e-308, 
            "jsd": 0.683475215022, 
            "syn_auc": 0.501343888638, 
            "syn_elbow_pt": 0.238483180449, 
            "syn_jsd": 0.365981118981
        }
    ]
}
