{
    "name": "Untitled", 
    "desc": "No description", 
    "flagstat_qc": [
        {
            "total": 97545950, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 90522904, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 92.8, 
            "paired": 97545950, 
            "paired_qc_failed": 0, 
            "read1": 48772975, 
            "read1_qc_failed": 0, 
            "read2": 48772975, 
            "read2_qc_failed": 0, 
            "paired_properly": 89344566, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 91.59, 
            "with_itself": 90014750, 
            "with_itself_qc_failed": 0, 
            "singletons": 508154, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.52, 
            "diff_chroms": 108628, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "ctl_flagstat_qc": [
        {
            "total": 107823298, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 102808981, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 95.35, 
            "paired": 107823298, 
            "paired_qc_failed": 0, 
            "read1": 53911649, 
            "read1_qc_failed": 0, 
            "read2": 53911649, 
            "read2_qc_failed": 0, 
            "paired_properly": 101046955, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 93.72, 
            "with_itself": 102222603, 
            "with_itself_qc_failed": 0, 
            "singletons": 586378, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.54, 
            "diff_chroms": 271557, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "dup_qc": [
        {
            "unpaired_reads": 0, 
            "paired_reads": 40093165, 
            "unmapped_reads": 0, 
            "unpaired_dupes": 0, 
            "paired_dupes": 15049468, 
            "paired_opt_dupes": 7741, 
            "dupes_pct": 0.375362
        }
    ], 
    "ctl_dup_qc": [
        {
            "unpaired_reads": 0, 
            "paired_reads": 44955145, 
            "unmapped_reads": 0, 
            "unpaired_dupes": 0, 
            "paired_dupes": 9651370, 
            "paired_opt_dupes": 7508, 
            "dupes_pct": 0.214689
        }
    ], 
    "pbc_qc": [
        {
            "total_read_pairs": 40091607, 
            "distinct_read_pairs": 25042690, 
            "one_read_pair": 15940245, 
            "two_read_pair": 5752601, 
            "NRF": 0.624637, 
            "PBC1": 0.636523, 
            "PBC2": 2.770963
        }
    ], 
    "ctl_pbc_qc": [
        {
            "total_read_pairs": 44902840, 
            "distinct_read_pairs": 35263532, 
            "one_read_pair": 27974043, 
            "two_read_pair": 5543562, 
            "NRF": 0.78533, 
            "PBC1": 0.793285, 
            "PBC2": 5.046222
        }
    ], 
    "nodup_flagstat_qc": [
        {
            "total": 50087394, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 50087394, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 100.0, 
            "paired": 50087394, 
            "paired_qc_failed": 0, 
            "read1": 25043697, 
            "read1_qc_failed": 0, 
            "read2": 25043697, 
            "read2_qc_failed": 0, 
            "paired_properly": 50087394, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 100.0, 
            "with_itself": 50087394, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "ctl_nodup_flagstat_qc": [
        {
            "total": 70607550, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 70607550, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 100.0, 
            "paired": 70607550, 
            "paired_qc_failed": 0, 
            "read1": 35303775, 
            "read1_qc_failed": 0, 
            "read2": 35303775, 
            "read2_qc_failed": 0, 
            "paired_properly": 70607550, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 100.0, 
            "with_itself": 70607550, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "overlap_reproducibility_qc": {
        "Nt": 0, 
        "N1": 84818, 
        "Np": 0, 
        "N_opt": 84818, 
        "N_consv": 84818, 
        "opt_set": "rep1-pr", 
        "consv_set": "rep1-pr", 
        "rescue_ratio": 0.0, 
        "self_consistency_ratio": 1.0, 
        "reproducibility": "pass"
    }, 
    "xcor_score": [
        {
            "num_reads": 15000000, 
            "est_frag_len": 115, 
            "corr_est_frag_len": 0.144637144289891, 
            "phantom_peak": 50, 
            "corr_phantom_peak": 0.151076, 
            "argmin_corr": 1500, 
            "min_corr": 0.1382437, 
            "NSC": 1.046248, 
            "RSC": 0.4982307
        }
    ], 
    "frip_macs2_qc": {
        "rep1": {
            "FRiP": 0.166432147179
        }, 
        "rep1-pr1": {
            "FRiP": 0.174158924423
        }, 
        "rep1-pr2": {
            "FRiP": 0.173271054624
        }
    }, 
    "overlap_frip_qc": {
        "rep1-pr": {
            "FRiP": 0.101170421155
        }
    }, 
    "jsd_qc": [
        {
            "pct_gen_enrich": 0.269051421721, 
            "auc": 0.494238207684, 
            "ch_div": 0.125491575982, 
            "elbow_pt": 1.99818377872e-258, 
            "jsd": 0.59422364483, 
            "syn_auc": 0.498269360016, 
            "syn_elbow_pt": 0.109404315938, 
            "syn_jsd": 0.284430052306
        }
    ]
}
