/EXTERNAL McGill EMC/K006151_1_lane_gembs

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SAMPLE K006151_1_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 884454354 100.00 % 442227177 100.00 % 442227177 100.00 %
General Reads 846434742 95.70 % 424496356 95.99 % 421938386 95.41 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 1328650 0.15 % 667335 0.15 % 661315 0.15 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 36690962 4.15 % 17063486 3.86 % 19627476 4.44 %
Bisulfite_reads C2T 434774207 49.16 % 218049273 49.31 % 216724934 49.01 %
Bisulfite_reads G2A 412989185 46.69 % 207114418 46.83 % 205874767 46.55 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 347927138
Average Unique 78.68 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 34363165928 38.47 % 14172890189 31.73 % 20190275739 45.20 %
Base Counts Overall C 10105984015 11.31 % 918664185 2.06 % 9187319830 20.57 %
Base Counts Overall G 10404797487 11.65 % 9415059536 21.08 % 989737951 2.22 %
Base Counts Overall T 33556216124 37.56 % 19710517732 44.13 % 13845698392 31.00 %
Base Counts Overall N 899726200 1.01 % 447813235 1.00 % 451912965 1.01 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9675528175333226
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 405600800



Mapping Quality

Mapping Quality Histogram
K006151_1_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K006151_1_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
McGill0024.Bisulfite-Seq.DNA_Methylation.EGAX00001272958.fastq_MS002401